3. Visualize sequence conservation onto the 3D structure :

        How to map data to structure using MOLMOL

The MOLMOL files generated by ProtSkin are macros to visualize a worm/surface representation of sequence conservation onto your PDB structure using MOLMOL. Here are the menu commands to launch either macro :

Worm representation

MOLMOL worm
  • File / Read Mol / PDB...
  • (select the PDB file you submitted to ProtSkin)
  • File / Macro / Execute User...
  • (select MOLMOL file generated by ProtSkin)

Surface representation

MOLMOL surface