3. Visualize sequence conservation onto the 3D structure :
How to map data to structure using PyMOL
The PyMOL file generated by ProtSkin is a coloring macro which can be used to visualize a representation of sequence conservation onto your PDB structure using PyMOL. Here is an example of commands to obtain a surface representation :
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Surface representationload /path/to/your/structure/file.pdb hide all show surface @/path/to/your/coloring/macro/000000-pymol.pml |
